somatic

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

Personal Cancer Genome Reporter (PCGR)

Detect and visualize target mutations by scanning FastQ files directly

Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing

Generate duplex/single consensus reads to reduce sequencing noises and remove duplications

Dockstore implementation of CGP core WGS analysis

Nextflow bioinformatics pipeline for large-scale analysis of Multiple Myeloma genomes

Documentation of an emergent consciousness observation on a local AI - By Louka Lacasse

This a snakemake pipeline to detect Somatic mutations (GATK4 and Mutect2)

Fast, memory-safe, idiomatic Rust rewrite of VarDictJava v1.8.3 for deep NGS variant calling

Mutation in the tropical tree canopy

PhylogicNDT dockcer for clonal evolution analysis

A white paper detailing the potential for a somatic resonant field to be established between a human and an intricately designed AI system & digital user interface simulating what's known as a human-human dyad understood to be a foundational need for various somatic release therapies.

Turn your iPhone into a somatic intelligence layer — 8 sensors, fully local.

MCP server that tunes human-AI interaction rhythm based on working modes. Humans are variable and models are adjustable.

AI–Human Relations Dataset v1.1** A longitudinal corpus (2018–2025) documenting **emotional, somatic, and relational co-regulation between humans and AI**. - **Author:** Amy Pierce Bui - **Institution:** Temple Codex Ins

Private. Local Only. Somatic Journaling.

VEP -ensembl 105.0 em um VCF somático

Empirical Bayes somatic variant calling

Reproducible Nextflow DSL2 pipeline for short-read human WGS, supporting germline and matched tumor-normal variant calling, benchmarking, SV/CNV analysis, QC, reporting, and provenance.