AIRFold Protein Structure Prediction System
proStAMP is a Snakemake pipeline for protein structure-based annotation of microbial SNPs, integrating genomic, functional, and structural features
De novo therapeutic peptide design pipeline using RFdiffusion and ESMFold to hallucinate NaV1.7 pain-channel blockers locally on CPU
ESMFold2 on Apple silicon: MLX/Metal folding trunk and sampler, 8-bit ESMC-6B. 7.5x faster than Biohub's code on an M1 Pro (unofficial port)
Automated discovery pipeline and 3D screening studio mining novel antimicrobial peptides (AMPs) from extremophile genomes.
Code for "Ancient amino acid sets enable stable protein folds": protein design with reduced amino acid alphabets (RFdiffusion + ProteinMPNN), mutation simulations with ESMFold, and analysis of the designs.
Unified Python library and CLI for protein structure prediction and inverse folding.
Lightweight AI drug virtual screening platform for biologic industry. Nearly 20 years of expertise in biopharma R&D, manufacturing, quality and regulatory affairs.
Local-first multi-agent AI for precision oncology (TP53): AlphaFold/ESMFold structures, ESM-2 variant scoring, ΔΔG stability, AutoDock Vina molecular docking and a per-agent reasoning audit benchmarked against ClinVar/IARC. Offline on 8 GB RAM; HL7 FHIR R4; 566 tests. Research use only.
Rooted, dual-method (ML + Bayesian) phylogeny of the bacterial Hfq family, with archaeal SmAP outgroup rooting and ESMFold/Foldseek structural verification
Code and frozen results for a phosphorylation structural-effect benchmark evaluating AlphaFold3 / ESMFold (data-purity gate P1-P5)
A protein sequence logo in 3D, wrapped around its own predicted structure. Amino acid letters stacked by how strongly a language model expects them, with no multiple sequence alignment anywhere.
EpitopePred — An integrated immunoinformatics web server for automated multi-epitope vaccine engineering against viral, bacterial, protozoal, and fungal pathogens. Combines 30+ bioinformatics tools with deep learning (ESMFold, ESM-1b) and asynchronous pipeline orchestration.
蛋白结构预测与设计域插件（dsh-bio-genie 生态）：ProteinMPNN/SolubleMPNN/LigandMPNN 序列设计 + 区域重设计 + ESMFold 折叠/复折叠 + 界面分析 + 共识排序/接触聚类/覆盖审计/预算调度 | protein structure prediction & design plugin for dsh (dsh-bio family)
a lightweight cli wrapper around ESMFold2 for fast protein complex prediction from FASTA input.
ESM-Stream: Streamlit app for Protein Structure Prediction using ESMFold, powered by deep learning
生信模式 (Bioinformatics Mode) — research-grade protein structure & interaction agent preset for DeepSeek Harness: AF2-Multimer, ESMFold, AutoDock Vina, MM-GBSA/MD, structure QA, virtual screening.
ESMFold - Evolutionary-scale prediction of atomic-level protein structure with a language model
Ribonucleic Acid Folding Oracle
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