dmri

A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning

MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit

Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.

White matter tractography clustering and more...

A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k

ORG Fiber Clustering White Matter Atlas

Introduction to dMRI

Reconstruction of preprocessed q-space images (dMRI)

ElikoPy is Python library aiming at easing the processing of diffusion imaging for microstructural analysis.

KUL/UZ NeuroImaging Suite. A set of tools for brain and spine MRI analysis.

MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.

Tractography learning

Automated tractography using MRTrix3 CSD based on subject-specific parcellations from FreeSurfer and MultiScaleBrainParcellator

[CVPR'26 Highlight] Official Implementation of GenTract: Generative Global Tractography

An end-to-end python package for intravoxel incoherent motion (IVIM) analysis of diffusion MRI data

Source code for FiberStars, a visualization tool for comparing dMRI data of multiple subjects.

A flexible framework for volume-wise artifact estimation and correction across multiple 4D neuroimaging modalities (diffusion MRI, functional MRI, and PET)

Scripts related to "Longitudinal changes of ADHD symptoms in association with white matter microstructure: A tract-specific fixel-based analysis"

Code repository for EPINR - EPI Distortion Correction without Opposite Phase Encodings with Unsupervised INR-Based Deformable Registration